American-Gut | American Gut open-access data and IPython notebooks

American-Gut is a Jupyter Notebook library. American-Gut has no bugs, it has no vulnerabilities and it has low support. However American-Gut has a Non-SPDX License. You can download it from GitHub.

American Gut open-access code and IPython notebooks. A note about data ---. American Gut sequences and metadata are deposited in [The European Bioinformatics Institute] under the accession ERP012803. Bloom sequences found in the data repository are correct and up to date. OTU tables and mapping files hosted in this repository reflects the state of the project in May 2015 and before. This includes an earlier version of the American Gut survey and dietary questionnaire. Data in GitHub has been scrubbed for PHI. A listing of processed data with the new survey can be found at [ftp://ftp.microbio.me/AmericanGut] ftp://ftp.microbio.me/AmericanGut). The latest OTU tables and precalculated diversity comparisons generated by the primary processing notebook set can be found at [ftp://ftp.microbio.me/AmericanGut/latest] ftp://ftp.microbio.me/AmericanGut/latest).